HL_3K0J_001

3D structure

PDB id

3K0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUUGCACUCG*G

Length

12 nucleotides

Bulged bases

3K0J|1|E|C|27, 3K0J|1|E|U|30, 3K0J|1|E|C|32

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3K0J_001 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1478

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3K0J|1|E|C|22
3K0J|1|E|A|23
3K0J|1|E|U|24
3K0J|1|E|U|25
3K0J|1|E|G|26
3K0J|1|E|C|27
3K0J|1|E|A|28
3K0J|1|E|C|29
3K0J|1|E|U|30
3K0J|1|E|C|32
3K0J|1|E|G|33
*
3K0J|1|E|G|33

Current chains

Chain E

RNA (87-MER)

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A

Chain D

U1 small nuclear ribonucleoprotein A