3K0J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3K0J_002 | 1/E/66:73 | T-loop related HL_77436.5 | ||
| HL_3K0J_004 | 1/F/166:173 | T-loop related | geometric HL_7TZS_002 HL_77436.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3K0J_001 | No text annotation | ||
| HL_3K0J_003 | U1 small nuclear ribonucleoprotein A binding hairpin |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3K0J_002 | 1/E/18:20, 1/E/35:36 | Minor groove platform related IL_51454.3 | ||
| IL_3K0J_003 | 1/E/59:63, 1/E/76:80 | cWH basepair and non-canonical AC IL_38634.5 | ||
| IL_3K0J_008 | 1/F/113:116, 1/F/138:148 | No text annotation | ||
| IL_3K0J_005 | 1/F/115:116, 1/F/138:145 | Stack outside cWW | geometric IL_7TZS_002 IL_38394.1 | |
| IL_3K0J_009 | 1/F/118:120, 1/F/135:136 | Minor groove platform related | geometric IL_3K0J_002 IL_51454.3 | |
| IL_3K0J_007 | 1/F/159:163, 1/F/176:180 | cWH basepair and non-canonical AC | geometric IL_3D2V_003 IL_38634.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3K0J_001 | No text annotation | ||
| IL_3K0J_004 | Isolated non-canonical cWW pair | ||
| IL_3K0J_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3K0J_001 | 1/E/9:10, 1/E/51:57, 1/E/82:85 | No text annotation | ||
| J3_3K0J_002 | 1/F/109:110, 1/F/151:157, 1/F/182:185 | No text annotation |
Problematic loops
No problematic loops
Coloring options: