HL_3K0J_003

3D structure

PDB id

3K0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUUGCACCGC*G

Length

12 nucleotides

Bulged bases

3K0J|1|F|C|132, 3K0J|1|F|C|132

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3K0J_003 not in the Motif Atlas

Geometric match to HL_6LAX_001

Geometric discrepancy: 0.1407

The information below is about HL_6LAX_001

Detailed Annotation

U1 small nuclear ribonucleoprotein A binding hairpin

Broad Annotation

No text annotation

Motif group

HL_33074.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3K0J|1|F|C|122
3K0J|1|F|A|123
3K0J|1|F|U|124
3K0J|1|F|U|125
3K0J|1|F|G|126
3K0J|1|F|C|127
3K0J|1|F|A|128
3K0J|1|F|C|129
3K0J|1|F|C|132
3K0J|1|F|G|133
3K0J|1|F|C|132
*
3K0J|1|F|G|133

Current chains

Chain F

RNA (87-MER)

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A

Chain C

U1 small nuclear ribonucleoprotein A