HL_3K0J_004

3D structure

PDB id

3K0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAUGC

Length

8 nucleotides

Bulged bases

3K0J|1|F|G|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3K0J_004 not in the Motif Atlas

Geometric match to HL_7TZS_002

Geometric discrepancy: 0.1413

The information below is about HL_7TZS_002

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3K0J|1|F|G|166
3K0J|1|F|A|167
3K0J|1|F|U|168
3K0J|1|F|A|169
3K0J|1|F|A|170
3K0J|1|F|U|171
3K0J|1|F|G|172
3K0J|1|F|C|173

Current chains

Chain F

RNA (87-MER)

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A

Chain D

U1 small nuclear ribonucleoprotein A