HL_3KFU_001

3D structure

PDB id

3KFU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the transamidosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGGG(H2U)AG

Length

8 nucleotides

Bulged bases

3KFU|1|K|G|18, 3KFU|1|K|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3KFU_001 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.0053

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3KFU|1|K|C|13
3KFU|1|K|A|14
3KFU|1|K|G|15
3KFU|1|K|G|18
3KFU|1|K|G|19
3KFU|1|K|H2U|20
3KFU|1|K|A|21
3KFU|1|K|G|22

Current chains

Chain K

tRNA-Asn

Nearby chains

Chain C

Non-discriminating and archaeal-type aspartyl-tRNA synthetase

Chain I

Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B