3KFU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3KFU_002 | 1/K/31:39 | No text annotation | homologous HL_3KFU_005 HL_50537.6 | |
| HL_3KFU_003 | 1/K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3KFU_006 HL_28252.7 | |
| HL_3KFU_005 | 1/L/31:39 | No text annotation HL_50537.6 | ||
| HL_3KFU_006 | 1/L/53:61 | T-loop with 2 stacked bulged bases HL_28252.7 | ||
| HL_3KFU_008 | 1/M/31:39 | No text annotation | homologous HL_3KFU_005 HL_50537.6 | |
| HL_3KFU_011 | 1/N/31:39 | No text annotation | homologous HL_3KFU_005 HL_50537.6 | |
| HL_3KFU_012 | 1/N/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1B23_003 HL_28252.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3KFU_001 | No text annotation | ||
| HL_3KFU_004 | No text annotation | ||
| HL_3KFU_007 | No text annotation | ||
| HL_3KFU_009 | T-loop with 2 stacked bulged bases | ||
| HL_3KFU_010 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3KFU_001 | Isolated non-canonical cWW pair | ||
| IL_3KFU_002 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3KFU_001 | 1/K/7:10, 1/K/25:27, 1/K/43:49, 1/K/65:66 | tRNA junction | homologous J4_3KFU_002 J4_70449.27 | |
| J4_3KFU_002 | 1/L/7:10, 1/L/25:27, 1/L/43:49, 1/L/65:66 | tRNA junction J4_70449.27 | ||
| J4_3KFU_003 | 1/M/7:10, 1/M/25:27, 1/M/43:49, 1/M/65:66 | tRNA junction | homologous J4_3KFU_002 J4_70449.27 | |
| J4_3KFU_004 | 1/N/7:10, 1/N/25:27, 1/N/43:49, 1/N/65:66 | tRNA junction | homologous J4_3KFU_002 J4_70449.27 |
Problematic loops
No problematic loops
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