HL_3KTV_003

3D structure

PDB id

3KTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human SRP19/S-domain SRP RNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3KTV_003 not in the Motif Atlas

Homologous match to HL_1MFQ_001

Geometric discrepancy: 0.1184

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

3KTV|1|C|G|146
3KTV|1|C|G|147
3KTV|1|C|G|148
3KTV|1|C|A|149
3KTV|1|C|G|150
3KTV|1|C|C|151

Current chains

Chain C

SRP RNA

Nearby chains

Chain D

Signal recognition particle 19 kDa protein