3KTV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3KTV_001 | 1/A/146:151 | GNRA variation | homologous HL_1MFQ_001 HL_34789.4 | |
| HL_3KTV_002 | 1/A/197:202 | GNRA | homologous HL_1MFQ_002 HL_34789.4 | |
| HL_3KTV_003 | 1/C/146:151 | GNRA variation | homologous HL_1MFQ_001 HL_34789.4 | |
| HL_3KTV_004 | 1/C/169:174 | No text annotation | geometric HL_4V9F_003 HL_75660.8 | |
| HL_3KTV_005 | 1/C/197:202 | GNRA | homologous HL_1MFQ_002 HL_34789.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3KTV_012 | 1/A/129:134, 1/A/163:168 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_3KTV_002 | 1/A/130:134, 1/A/163:167 | No text annotation | ||
| IL_3KTV_003 | 1/A/138:141, 1/A/156:159 | Tandem non-canonical cWW pairs | homologous IL_1MFQ_004 IL_15225.2 | |
| IL_3KTV_013 | 1/A/175:177, 1/A/220:221 | Single bulged A | homologous IL_1MFQ_005 IL_14190.2 | |
| IL_3KTV_005 | 1/A/181:187, 1/A/212:216 | No text annotation | ||
| IL_3KTV_006 | 1/A/190:195, 1/A/204:209 | tSH-tHW-tHS-cWW | homologous IL_1MFQ_007 IL_35186.2 | |
| IL_3KTV_008 | 1/C/132:134, 1/C/163:165 | Isolated non-canonical cWW pair | homologous IL_1MFQ_003 IL_01003.4 | |
| IL_3KTV_009 | 1/C/138:141, 1/C/156:159 | Tandem non-canonical cWW pairs | homologous IL_1MFQ_004 IL_15225.2 | |
| IL_3KTV_010 | 1/C/181:187, 1/C/212:216 | No text annotation | ||
| IL_3KTV_011 | 1/C/190:195, 1/C/204:209 | tSH-tHW-tHS-cWW | homologous IL_1MFQ_007 IL_35186.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3KTV_001 | No text annotation | ||
| IL_3KTV_004 | Isolated non-canonical cWW pair | ||
| IL_3KTV_007 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3KTV_004 | 1/A/128:129, 1/A/168:175, 1/A/221:222 | No text annotation | ||
| J3_3KTV_005 | 1/C/128:129, 1/C/168:177, 1/C/220:222 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3KTV_001 | No text annotation | ||
| J3_3KTV_002 | No text annotation | ||
| J3_3KTV_003 | No text annotation |
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