HL_3MJA_001

3D structure

PDB id

3MJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate, structure #2

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUUAGGUAGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

3MJA|1|B|A|6184
3MJA|1|B|U|6185
3MJA|1|B|U|6186
3MJA|1|B|A|6187
3MJA|1|B|G|6188
3MJA|1|B|G|6189
3MJA|1|B|U|6190
3MJA|1|B|A|6191
3MJA|1|B|G|6192
3MJA|1|B|U|6193

Current chains

Chain B

Domain 3 of the cricket paralysis virus intergenic region IRES RNA

Nearby chains

Chain C

RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')