Motif HL_41019.2 Version HL_41019.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PDR_003 | 3PDR | 0.6550 | 0 | X | M-box riboswitch (ykoK leader) | G | 127 | A | 128 | U | 129 | G | 130 | C | 131 | U | 132 | U | 133 | G | 134 | U | 135 | C | 136 | cWW | ||
| 2 | HL_387D_001 | 387D | 0.5270 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
| 3 | HL_6XKO_003 | 6XKO | 0.5795 | 0 | A | PreQ1-III riboswitch | G | 63 | C | 64 | U | 65 | G | 66 | G | 67 | C | 68 | G | 69 | G | 70 | U | 71 | C | 72 | cWW | ||
| 4 | HL_3MJA_001 | 3MJA | 0.0000 | 0 | Anticodon loop related | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | |
| 5 | HL_7MKY_001 | 7MKY | 0.6493 | 2 | A | RNA (66-MER) | G | 9 | U | 10 | C | 12||A | A | 13 | G | 14 | C | 15 | C | 16 | C | 17 | G | 18 | C | 20 | cWW | cBW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGCUUGUC | 1 |
| GAAGUGCAAC | 1 |
| GCUGGCGGUC | 1 |
| AUUAGGUAGU | 1 |
| GUGCAGCCCGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCUUGU | 1 |
| AAGUGCAA | 1 |
| CUGGCGGU | 1 |
| UUAGGUAG | 1 |
| UGCAGCCCGU | 1 |
- Annotations
-
- (4)
- Anticodon loop related (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.47 | Avg 0.55 | Max 0.98
Coloring options: