HL_3NDB_001

3D structure

PDB id

3NDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a signal sequence bound to the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAGG

Length

6 nucleotides

Bulged bases

3NDB|1|M|U|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57875.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

3NDB|1|M|U|162
3NDB|1|M|G|163
3NDB|1|M|U|164
3NDB|1|M|A|165
3NDB|1|M|G|166
3NDB|1|M|G|167

Current chains

Chain M

SRP RNA

Nearby chains

Chain A

Signal recognition particle 19 kDa protein