HL_3OTO_003

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3OTO_003 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.264

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

3OTO|1|A|G|157
3OTO|1|A|G|158
3OTO|1|A|G|159
3OTO|1|A|A|160
3OTO|1|A|A|161
3OTO|1|A|A|162
3OTO|1|A|C|163
3OTO|1|A|U|164

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20