HL_3OTO_025

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

3OTO|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3OTO_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1228

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

3OTO|1|A|G|1089
3OTO|1|A|U|1090
3OTO|1|A|U|1091
3OTO|1|A|A|1092
3OTO|1|A|A|1093
3OTO|1|A|G|1094
3OTO|1|A|U|1095
3OTO|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain G

30S RIBOSOMAL PROTEIN S7