HL_3OTO_030
3D structure
- PDB id
- 3OTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.69 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 3OTO|1|A|C|1359, 3OTO|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3OTO_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.174
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3OTO|1|A|G|1356
3OTO|1|A|A|1357
3OTO|1|A|U|1358
3OTO|1|A|C|1359
3OTO|1|A|A|1360
3OTO|1|A|G|1361
3OTO|1|A|C|1361|||A
3OTO|1|A|C|1362
3OTO|1|A|A|1363
3OTO|1|A|U|1364
3OTO|1|A|G|1365
3OTO|1|A|C|1366
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain U
- 30S RIBOSOMAL PROTEIN THX
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