HL_3PHP_010

3D structure

PDB id

3PHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE 3' HAIRPIN OF THE TYMV PSEUDOKNOT: PREFORMATION IN RNA FOLDING

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGGGUCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PHP_010 not in the Motif Atlas

Geometric match to HL_7ENI_002

Geometric discrepancy: 0.3967

The information below is about HL_7ENI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

3PHP|10|A|A|8
3PHP|10|A|G|9
3PHP|10|A|G|10
3PHP|10|A|G|11
3PHP|10|A|U|12
3PHP|10|A|C|13
3PHP|10|A|A|14
3PHP|10|A|U|15

Current chains

Chain A

RNA (5'-R(*GP*GP*UP*UP*CP*CP*GP*AP*GP*GP*GP*UP*CP*AP*UP*CP*GP*GP*AP*AP*CP*CP*A) -3')

Nearby chains