HL_3PIO_010

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUGAGAGUCC

Length

11 nucleotides

Bulged bases

3PIO|1|X|G|340, 3PIO|1|X|A|341, 3PIO|1|X|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_010 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.1819

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

3PIO|1|X|G|337
3PIO|1|X|G|338
3PIO|1|X|U|339
3PIO|1|X|G|340
3PIO|1|X|A|341
3PIO|1|X|G|342
3PIO|1|X|A|343
3PIO|1|X|G|344
3PIO|1|X|U|345
3PIO|1|X|C|346
3PIO|1|X|C|347

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24