3PIO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3PIO_001 | 1/X/58:67 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.2 | |
| HL_3PIO_002 | 1/X/85:95 | No text annotation | homologous HL_7A0S_002 HL_76590.1 | |
| HL_3PIO_003 | 1/X/121:126 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_3PIO_004 | 1/X/133:138 | No text annotation | geometric HL_4V88_198 NA | |
| HL_3PIO_005 | 1/X/146:151 | GNRA | homologous HL_7A0S_005 HL_34789.5 | |
| HL_3PIO_006 | 1/X/165:185 | No text annotation | ||
| HL_3PIO_007 | 1/X/202:207 | No text annotation | homologous HL_7A0S_007 HL_91813.1 | |
| HL_3PIO_008 | 1/X/223:229 | No text annotation | homologous HL_7A0S_008 HL_76371.3 | |
| HL_3PIO_009 | 1/X/316:323 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.4 | |
| HL_3PIO_010 | 1/X/337:347 | tRNA D-loop | geometric HL_5UD5_001 HL_89167.3 | |
| HL_3PIO_075 | 1/X/395:405 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_3PIO_012 | 1/X/423:430 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_3PIO_013 | 1/X/473:478 | GNRA | homologous HL_4WF9_015 HL_34789.5 | |
| HL_3PIO_014 | 1/X/498:503 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_3PIO_015 | 1/X/552:560 | No text annotation | geometric HL_4V9F_019 HL_42293.1 | |
| HL_3PIO_016 | 1/X/575:584 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_018 HL_33597.4 | |
| HL_3PIO_017 | 1/X/622:627 | No text annotation | geometric HL_7A0S_019 HL_61337.5 | |
| HL_3PIO_018 | 1/X/640:645 | GNRA | homologous HL_5J7L_152 NA | |
| HL_3PIO_019 | 1/X/651:658 | No text annotation | homologous HL_7A0S_021 HL_81314.1 | |
| HL_3PIO_021 | 1/X/757:766 | No text annotation | homologous HL_4WF9_023 HL_50204.2 | |
| HL_3PIO_022 | 1/X/792:798 | UNCG variation | homologous HL_7A0S_023 HL_91813.1 | |
| HL_3PIO_023 | 1/X/839:844 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_3PIO_025 | 1/X/966:973 | GNRA | homologous HL_7RQB_027 NA | |
| HL_3PIO_026 | 1/X/989:996 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_3PIO_027 | 1/X/1070:1090 | No text annotation | ||
| HL_3PIO_028 | 1/X/1103:1110 | GNRA with tandem sheared | homologous HL_6PRV_002 HL_98423.4 | |
| HL_3PIO_030 | 1/X/1235:1240 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_3PIO_031 | 1/X/1294:1302 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.4 | |
| HL_3PIO_032 | 1/X/1337:1343 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_3PIO_033 | 1/X/1376:1381 | GNRA | homologous HL_5J7L_167 NA | |
| HL_3PIO_076 | 1/X/1402:1411 | No text annotation | homologous HL_7A0S_035 HL_77449.2 | |
| HL_3PIO_035 | 1/X/1463:1478 | No text annotation | ||
| HL_3PIO_036 | 1/X/1508:1514 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_3PIO_037 | 1/X/1549:1554 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_3PIO_038 | 1/X/1581:1584 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_3PIO_039 | 1/X/1628:1635 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_3PIO_040 | 1/X/1647:1652 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_3PIO_041 | 1/X/1708:1713 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_3PIO_042 | 1/X/1731:1735 | No text annotation | homologous HL_7A0S_043 NA | |
| HL_3PIO_043 | 1/X/1743:1747 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_3PIO_044 | 1/X/1767:1779 | No text annotation | homologous HL_7A0S_045 HL_50951.2 | |
| HL_3PIO_045 | 1/X/1797:1803 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_3PIO_046 | 1/X/1853:1864 | No text annotation | ||
| HL_3PIO_077 | 1/X/1932:1940 | No text annotation | homologous HL_9DFE_047 HL_33350.1 | |
| HL_3PIO_048 | 1/X/2010:2019 | No text annotation | homologous HL_7A0S_049 HL_78372.2 | |
| HL_3PIO_050 | 1/X/2188:2197 | No text annotation | ||
| HL_3PIO_051 | 1/X/2227:2235 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_3PIO_052 | 1/X/2243:2255 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_3PIO_053 | 1/X/2282:2292 | No text annotation | homologous HL_7A0S_054 NA | |
| HL_3PIO_054 | 1/X/2303:2310 | Pseudoknot geometry | geometric HL_7A0S_055 HL_52651.3 | |
| HL_3PIO_055 | 1/X/2334:2341 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.3 | |
| HL_3PIO_056 | 1/X/2353:2358 | GNRA | homologous HL_4WF9_054 HL_34789.5 | |
| HL_3PIO_057 | 1/X/2383:2392 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_3PIO_058 | 1/X/2450:2458 | No text annotation | homologous HL_4WF9_056 HL_52011.2 | |
| HL_3PIO_059 | 1/X/2507:2514 | GNRA variation | homologous HL_7A0S_060 HL_46665.3 | |
| HL_3PIO_060 | 1/X/2530:2536 | LSU A loop | homologous HL_4WF9_058 HL_48677.2 | |
| HL_3PIO_061 | 1/X/2573:2578 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_3PIO_062 | 1/X/2637:2642 | GNRA | homologous HL_7RQB_064 NA | |
| HL_3PIO_063 | 1/X/2680:2685 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_3PIO_064 | 1/X/2725:2739 | No text annotation | homologous HL_7A0S_065 HL_53269.3 | |
| HL_3PIO_066 | 1/X/2794:2802 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_3PIO_067 | 1/X/2831:2836 | GNRA | homologous HL_5J7L_202 NA | |
| HL_3PIO_078 | 1/Y/32:56 | No text annotation | ||
| HL_3PIO_069 | 1/Y/88:93 | GNRA | homologous HL_7A0S_070 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3PIO_011 | No text annotation | ||
| HL_3PIO_070 | No text annotation | ||
| HL_3PIO_020 | No text annotation | ||
| HL_3PIO_024 | tRNA D-loop | ||
| HL_3PIO_071 | No text annotation | ||
| HL_3PIO_029 | No text annotation | ||
| HL_3PIO_034 | No text annotation | ||
| HL_3PIO_072 | No text annotation | ||
| HL_3PIO_047 | No text annotation | ||
| HL_3PIO_049 | No text annotation | ||
| HL_3PIO_073 | No text annotation | ||
| HL_3PIO_074 | No text annotation | ||
| HL_3PIO_065 | No text annotation | ||
| HL_3PIO_068 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3PIO_002 | 1/X/24:30, 1/X/520:526 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.2 | |
| IL_3PIO_147 | 1/X/35:38, 1/X/453:457 | No text annotation | geometric IL_8BH9_001 IL_65740.2 | |
| IL_3PIO_003 | 1/X/36:37, 1/X/454:456 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_3PIO_005 | 1/X/41:44, 1/X/446:450 | No text annotation | ||
| IL_3PIO_123 | 1/X/54:76, 1/X/107:113 | No text annotation | ||
| IL_3PIO_148 | 1/X/80:84, 1/X/96:103 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_3PIO_008 | 1/X/160:161, 1/X/189:191 | Single stack bend | homologous IL_7A0S_005 IL_15011.4 | |
| IL_3PIO_009 | 1/X/215:222, 1/X/230:236 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_62167.4 | |
| IL_3PIO_012 | 1/X/573:575, 1/X/584:586 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.4 | |
| IL_3PIO_013 | 1/X/600:602, 1/X/678:679 | Single bulged A | homologous IL_7A0S_012 IL_14190.3 | |
| IL_3PIO_014 | 1/X/616:620, 1/X/629:633 | AAA cross-strand stack | geometric IL_4WF9_019 IL_66798.3 | |
| IL_3PIO_016 | 1/X/685:687, 1/X/819:821 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_3PIO_017 | 1/X/687:691, 1/X/812:819 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_3PIO_019 | 1/X/710:711, 1/X/776:778 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_3PIO_020 | 1/X/715:716, 1/X/741:743 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_3PIO_021 | 1/X/716:721, 1/X/736:741 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_29495.2 | |
| IL_3PIO_022 | 1/X/751:754, 1/X/769:771 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_3PIO_023 | 1/X/754:756, 1/X/767:769 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_01003.5 | |
| IL_3PIO_024 | 1/X/788:790, 1/X/800:804 | Multiple bulged bases | geometric IL_7A0S_021 IL_89509.2 | |
| IL_3PIO_025 | 1/X/850:851, 1/X/951:953 | Single stack bend | homologous IL_4WF9_028 IL_15011.4 | |
| IL_3PIO_149 | 1/X/857:861, 1/X/942:945 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_3PIO_150 | 1/X/863:866, 1/X/936:940 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.3 | |
| IL_3PIO_028 | 1/X/870:875, 1/X/927:932 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7A0S_027 NA | |
| IL_3PIO_127 | 1/X/871:876, 1/X/925:931 | No text annotation | ||
| IL_3PIO_029 | 1/X/875:876, 1/X/925:927 | Minor groove platform | geometric IL_7A0S_028 IL_34520.4 | |
| IL_3PIO_151 | 1/X/877:881, 1/X/921:924 | C-loop | homologous IL_4WF9_033 IL_16301.2 | |
| IL_3PIO_031 | 1/X/883:885, 1/X/917:919 | Isolated non-canonical cWW pair | homologous IL_7A0S_030 IL_42997.6 | |
| IL_3PIO_033 | 1/X/963:965, 1/X/974:976 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.5 | |
| IL_3PIO_034 | 1/X/1005:1007, 1/X/1170:1171 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_3PIO_035 | 1/X/1009:1013, 1/X/1164:1168 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_3PIO_152 | 1/X/1015:1024, 1/X/1160:1162 | No text annotation | ||
| IL_3PIO_038 | 1/X/1029:1035, 1/X/1150:1155 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_3PIO_121 | 1/X/1035:1041, 1/X/1135:1150 | No text annotation | geometric IL_7A0S_037 IL_50715.4 | |
| IL_3PIO_039 | 1/X/1042:1045, 1/X/1132:1134 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_3PIO_153 | 1/X/1049:1062, 1/X/1119:1128 | No text annotation | ||
| IL_3PIO_043 | 1/X/1054:1064, 1/X/1117:1123 | No text annotation | ||
| IL_3PIO_154 | 1/X/1066:1068, 1/X/1092:1115 | No text annotation | ||
| IL_3PIO_130 | 1/X/1175:1178, 1/X/1196:1199 | Tandem non-canonical cWW pairs | homologous IL_7A0S_040 IL_71194.3 | |
| IL_3PIO_045 | 1/X/1210:1212, 1/X/1260:1263 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.6 | |
| IL_3PIO_047 | 1/X/1218:1220, 1/X/1252:1254 | No text annotation | ||
| IL_3PIO_131 | 1/X/1218:1228, 1/X/1247:1254 | No text annotation | ||
| IL_3PIO_048 | 1/X/1221:1228, 1/X/1247:1251 | No text annotation | ||
| IL_3PIO_049 | 1/X/1232:1234, 1/X/1241:1243 | Intercalated cWW | homologous IL_7A0S_044 IL_53541.1 | |
| IL_3PIO_050 | 1/X/1275:1282, 1/X/1994:2000 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.4 | |
| IL_3PIO_051 | 1/X/1323:1326, 1/X/1619:1620 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_74641.3 | |
| IL_3PIO_155 | 1/X/1332:1336, 1/X/1344:1346 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.2 | |
| IL_3PIO_053 | 1/X/1364:1368, 1/X/1389:1393 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_3PIO_054 | 1/X/1370:1374, 1/X/1383:1387 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_3PIO_058 | 1/X/1426:1430, 1/X/1598:1605 | Kink-turn | homologous IL_7A0S_050 IL_28245.1 | |
| IL_3PIO_059 | 1/X/1431:1435, 1/X/1593:1597 | UAA/GAN | homologous IL_7A0S_051 IL_08938.2 | |
| IL_3PIO_061 | 1/X/1447:1449, 1/X/1573:1576 | Isolated non-canonical cWW pair | homologous IL_7A0S_052 IL_38565.3 | |
| IL_3PIO_134 | 1/X/1451:1454, 1/X/1567:1571 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_3PIO_156 | 1/X/1488:1490, 1/X/1534:1535 | Single bulged C | homologous IL_7A0S_055 IL_05642.4 | |
| IL_3PIO_065 | 1/X/1491:1494, 1/X/1530:1533 | Double sheared | geometric IL_5J7L_333 NA | |
| IL_3PIO_068 | 1/X/1501:1507, 1/X/1515:1519 | No text annotation | ||
| IL_3PIO_070 | 1/X/1668:1673, 1/X/1987:1989 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_3PIO_071 | 1/X/1680:1682, 1/X/1978:1980 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.2 | |
| IL_3PIO_157 | 1/X/1683:1686, 1/X/1976:1977 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.3 | |
| IL_3PIO_072 | 1/X/1683:1691, 1/X/1973:1977 | No text annotation | homologous IL_7A0S_109 IL_80252.2 | |
| IL_3PIO_158 | 1/X/1686:1691, 1/X/1973:1976 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.2 | |
| IL_3PIO_073 | 1/X/1703:1708, 1/X/1713:1719 | tSH-tSH-tHH-tHS | geometric IL_7A0S_063 IL_20700.2 | |
| IL_3PIO_075 | 1/X/1761:1762, 1/X/1963:1965 | Single bulged A | homologous IL_4WF9_068 IL_14190.3 | |
| IL_3PIO_076 | 1/X/1789:1795, 1/X/1805:1813 | Kink-turn related | geometric IL_5J7L_313 NA | |
| IL_3PIO_137 | 1/X/1829:1834, 1/X/1881:1886 | No text annotation | ||
| IL_3PIO_159 | 1/X/1838:1841, 1/X/1876:1877 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_73108.3 | |
| IL_3PIO_080 | 1/X/1842:1847, 1/X/1870:1875 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_3PIO_160 | 1/X/1843:1852, 1/X/1865:1874 | No text annotation | ||
| IL_3PIO_081 | 1/X/1847:1853, 1/X/1864:1870 | No text annotation | ||
| IL_3PIO_082 | 1/X/1916:1917, 1/X/1947:1950 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_3PIO_083 | 1/X/1917:1928, 1/X/1944:1947 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_3PIO_084 | 1/X/2033:2035, 1/X/2596:2597 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_3PIO_085 | 1/X/2050:2052, 1/X/2421:2422 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_3PIO_086 | 1/X/2053:2054, 1/X/2417:2420 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_3PIO_087 | 1/X/2064:2066, 1/X/2215:2218 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.3 | |
| IL_3PIO_161 | 1/X/2064:2068, 1/X/2213:2218 | No text annotation | ||
| IL_3PIO_088 | 1/X/2068:2070, 1/X/2211:2213 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.4 | |
| IL_3PIO_093 | 1/X/2276:2278, 1/X/2296:2300 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_14250.2 | |
| IL_3PIO_141 | 1/X/2327:2332, 1/X/2343:2348 | No text annotation | ||
| IL_3PIO_095 | 1/X/2328:2332, 1/X/2343:2347 | Double sheared with near cWW | geometric IL_7A0S_056 IL_87767.3 | |
| IL_3PIO_096 | 1/X/2380:2382, 1/X/2393:2394 | Major groove platform | homologous IL_7A0S_082 IL_48076.9 | |
| IL_3PIO_097 | 1/X/2432:2433, 1/X/2477:2479 | Single stack bend | homologous IL_7A0S_083 IL_15011.4 | |
| IL_3PIO_098 | 1/X/2433:2434, 1/X/2475:2477 | Major groove platform | geometric IL_7A0S_084 IL_48076.9 | |
| IL_3PIO_099 | 1/X/2436:2440, 1/X/2468:2473 | No text annotation | ||
| IL_3PIO_100 | 1/X/2445:2449, 1/X/2459:2463 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_3PIO_101 | 1/X/2486:2487, 1/X/2559:2561 | Major groove platform | homologous IL_7A0S_088 IL_46637.3 | |
| IL_3PIO_102 | 1/X/2489:2491, 1/X/2553:2557 | Isolated non-canonical cWW with bulges | geometric IL_7A0S_089 IL_68118.5 | |
| IL_3PIO_103 | 1/X/2491:2492, 1/X/2550:2553 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_3PIO_104 | 1/X/2501:2502, 1/X/2519:2522 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_3PIO_105 | 1/X/2570:2571, 1/X/2580:2582 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_3PIO_106 | 1/X/2615:2619, 1/X/2754:2762 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_3PIO_107 | 1/X/2631:2637, 1/X/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.6 | |
| IL_3PIO_108 | 1/X/2658:2664, 1/X/2704:2708 | No text annotation | ||
| IL_3PIO_109 | 1/X/2666:2670, 1/X/2698:2702 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_3PIO_110 | 1/X/2674:2675, 1/X/2690:2694 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.3 | |
| IL_3PIO_111 | 1/X/2717:2722, 1/X/2742:2747 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_3PIO_113 | 1/X/2813:2814, 1/X/2853:2855 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.3 | |
| IL_3PIO_162 | 1/X/2818:2820, 1/X/2846:2849 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_3PIO_115 | 1/X/2822:2827, 1/X/2840:2844 | No text annotation | homologous IL_7A0S_101 IL_48489.2 | |
| IL_3PIO_116 | 1/Y/19:21, 1/Y/66:69 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.5 | |
| IL_3PIO_117 | 1/Y/25:30, 1/Y/58:62 | No text annotation | homologous IL_7A0S_103 IL_18472.5 | |
| IL_3PIO_118 | 1/Y/73:81, 1/Y/100:108 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_3PIO_119 | 1/Y/82:84, 1/Y/97:99 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3PIO_001 | Tandem non-canonical cWW pairs | ||
| IL_3PIO_122 | No text annotation | ||
| IL_3PIO_004 | Isolated non-canonical cWW pair | ||
| IL_3PIO_124 | No text annotation | ||
| IL_3PIO_006 | No text annotation | ||
| IL_3PIO_007 | No text annotation | ||
| IL_3PIO_125 | No text annotation | ||
| IL_3PIO_126 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_3PIO_010 | No text annotation | ||
| IL_3PIO_011 | Isolated non-canonical cWW pair | ||
| IL_3PIO_015 | No text annotation | ||
| IL_3PIO_018 | No text annotation | ||
| IL_3PIO_026 | No text annotation | ||
| IL_3PIO_027 | Partly complementary | ||
| IL_3PIO_030 | No text annotation | ||
| IL_3PIO_032 | Isolated non-canonical cWW pair | ||
| IL_3PIO_036 | Tandem non-canonical cWW pairs | ||
| IL_3PIO_037 | Isolated non-canonical cWW pair | ||
| IL_3PIO_040 | Isolated non-canonical cWW pair | ||
| IL_3PIO_128 | No text annotation | ||
| IL_3PIO_041 | No text annotation | ||
| IL_3PIO_042 | Isolated non-canonical cWW pair | ||
| IL_3PIO_044 | Isolated non-canonical cWW pair | ||
| IL_3PIO_129 | No text annotation | ||
| IL_3PIO_046 | Isolated non-canonical cWW pair | ||
| IL_3PIO_052 | No text annotation | ||
| IL_3PIO_055 | Isolated non-canonical cWW pair | ||
| IL_3PIO_056 | No text annotation | ||
| IL_3PIO_057 | Isolated non-canonical cWW pair | ||
| IL_3PIO_132 | No text annotation | ||
| IL_3PIO_133 | No text annotation | ||
| IL_3PIO_060 | No text annotation | ||
| IL_3PIO_062 | Double sheared with non-canonical cWW | ||
| IL_3PIO_063 | No text annotation | ||
| IL_3PIO_064 | Isolated non-canonical cWW pair | ||
| IL_3PIO_135 | Double sheared with near cWW | ||
| IL_3PIO_066 | No text annotation | ||
| IL_3PIO_067 | Isolated non-canonical cWW pair | ||
| IL_3PIO_069 | Tandem non-canonical cWW pairs | ||
| IL_3PIO_074 | Isolated non-canonical cWW pair | ||
| IL_3PIO_136 | Isolated non-canonical cWW pair | ||
| IL_3PIO_077 | Isolated non-canonical cWW pair | ||
| IL_3PIO_078 | No text annotation | ||
| IL_3PIO_079 | No text annotation | ||
| IL_3PIO_138 | No text annotation | ||
| IL_3PIO_139 | No text annotation | ||
| IL_3PIO_140 | No text annotation | ||
| IL_3PIO_089 | Isolated non-canonical cWW pair | ||
| IL_3PIO_090 | Other IL | ||
| IL_3PIO_091 | Tandem non-canonical cWW pairs | ||
| IL_3PIO_092 | Isolated non-canonical cWW pair | ||
| IL_3PIO_094 | Isolated non-canonical cWW pair | ||
| IL_3PIO_142 | No text annotation | ||
| IL_3PIO_143 | No text annotation | ||
| IL_3PIO_144 | No text annotation | ||
| IL_3PIO_112 | Isolated non-canonical cWW pair | ||
| IL_3PIO_114 | No text annotation | ||
| IL_3PIO_145 | No text annotation | ||
| IL_3PIO_146 | No text annotation | ||
| IL_3PIO_120 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3PIO_015 | 1/X/30:31, 1/X/485:495, 1/X/506:520 | No text annotation | homologous J3_7A0S_015 J3_17917.2 | |
| J3_3PIO_016 | 1/X/32:35, 1/X/457:472, 1/X/479:484 | No text annotation | homologous J3_7A0S_016 J3_07616.2 | |
| J3_3PIO_024 | 1/X/55:56, 1/X/69:76, 1/X/107:112 | No text annotation | ||
| J3_3PIO_025 | 1/X/308:312, 1/X/327:336, 1/X/348:352 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_3PIO_018 | 1/X/611:616, 1/X/633:639, 1/X/646:669 | No text annotation | ||
| J3_3PIO_002 | 1/X/696:702, 1/X/786:788, 1/X/804:807 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_3PIO_003 | 1/X/711:713, 1/X/745:749, 1/X/773:776 | No text annotation | homologous J3_7A0S_005 J3_69816.2 | |
| J3_3PIO_004 | 1/X/1066:1069, 1/X/1091:1103, 1/X/1110:1115 | No text annotation | ||
| J3_3PIO_005 | 1/X/1311:1316, 1/X/1641:1643, 1/X/1656:1659 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_3PIO_006 | 1/X/1319:1322, 1/X/1621:1627, 1/X/1636:1638 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_3PIO_026 | 1/X/1323:1327, 1/X/1351:1358, 1/X/1617:1620 | No text annotation | ||
| J3_3PIO_013 | 1/X/1326:1327, 1/X/1351:1358, 1/X/1617:1619 | No text annotation | ||
| J3_3PIO_027 | 1/X/1438:1443, 1/X/1580:1581, 1/X/1584:1590 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_3PIO_008 | 1/X/2074:2076, 1/X/2179:2183, 1/X/2202:2207 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_3PIO_028 | 1/X/2261:2263, 1/X/2363:2374, 1/X/2400:2406 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_3PIO_029 | 1/X/2274:2276, 1/X/2300:2302, 1/X/2311:2316 | No text annotation | homologous J3_7A0S_010 J3_05327.2 | |
| J3_3PIO_010 | 1/X/2496:2499, 1/X/2524:2526, 1/X/2540:2546 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_3PIO_011 | 1/X/2769:2771, 1/X/2781:2786, 1/X/2864:2868 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_3PIO_014 | 1/X/2789:2790, 1/X/2806:2811, 1/X/2857:2861 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_3PIO_012 | 1/Y/12:18, 1/Y/70:72, 1/Y/109:113 | No text annotation | homologous J3_7A0S_014 NA | |
| J4_3PIO_001 | 1/X/1283:1289, 1/X/1307:1308, 1/X/1662:1665, 1/X/1992:1993 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_3PIO_007 | 1/X/1361:1363, 1/X/1394:1399, 1/X/1414:1418, 1/X/1613:1614 | No text annotation | ||
| J4_3PIO_008 | 1/X/1458:1460, 1/X/1481:1482, 1/X/1541:1545, 1/X/1558:1563 | No text annotation | homologous J4_7A0S_007 J4_91813.1 | |
| J4_3PIO_004 | 1/X/1763:1767, 1/X/1779:1783, 1/X/1819:1822, 1/X/1958:1962 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_3PIO_009 | 1/X/2264:2268, 1/X/2322:2326, 1/X/2349:2351, 1/X/2360:2362 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_3PIO_006 | 1/X/2622:2625, 1/X/2653:2655, 1/X/2711:2716, 1/X/2748:2751 | No text annotation | homologous J4_7A0S_010 J4_54165.1 | |
| J5_3PIO_007 | 1/X/46:53, 1/X/114:119, 1/X/128:129, 1/X/142:143, 1/X/154:155 | No text annotation | homologous J5_7A0S_001 J5_75459.1 | |
| J5_3PIO_002 | 1/X/541:543, 1/X/569:573, 1/X/586:588, 1/X/1274:1275, 1/X/2000:2001 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_3PIO_003 | 1/X/593:598, 1/X/681:684, 1/X/822:825, 1/X/1209:1210, 1/X/1263:1269 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_3PIO_004 | 1/X/1691:1699, 1/X/1723:1724, 1/X/1742:1743, 1/X/1747:1755, 1/X/1971:1973 | No text annotation | homologous J5_7A0S_005 J5_99177.2 | |
| J5_3PIO_008 | 1/X/2037:2047, 1/X/2425:2432, 1/X/2479:2486, 1/X/2561:2567, 1/X/2585:2594 | No text annotation | ||
| J5_3PIO_009 | 1/X/2057:2060, 1/X/2222:2225, 1/X/2237:2238, 1/X/2260:2261, 1/X/2406:2414 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_3PIO_003 | 1/X/42:45, 1/X/156:160, 1/X/191:201, 1/X/208:212, 1/X/239:243, 1/X/439:449 | No text annotation | ||
| J6_3PIO_002 | 1/X/2055:2060, 1/X/2222:2225, 1/X/2237:2238, 1/X/2260:2264, 1/X/2362:2374, 1/X/2400:2416 | No text annotation | ||
| J6_3PIO_004 | 1/X/2057:2060, 1/X/2222:2225, 1/X/2237:2238, 1/X/2260:2263, 1/X/2363:2374, 1/X/2400:2414 | No text annotation | ||
| J7_3PIO_001 | 1/X/830:835, 1/X/848:849, 1/X/954:957, 1/X/982:987, 1/X/998:1002, 1/X/1174:1175, 1/X/1199:1204 | No text annotation | ||
| J9_3PIO_002 | 1/X/8:15, 1/X/535:541, 1/X/2001:2006, 1/X/2023:2026, 1/X/2604:2609, 1/X/2768:2771, 1/X/2781:2790, 1/X/2806:2811, 1/X/2857:2869 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3PIO_001 | No text annotation | ||
| J3_3PIO_017 | No text annotation | ||
| J3_3PIO_019 | No text annotation | ||
| J3_3PIO_020 | No text annotation | ||
| J3_3PIO_021 | No text annotation | ||
| J3_3PIO_007 | No text annotation | ||
| J3_3PIO_022 | No text annotation | ||
| J3_3PIO_023 | No text annotation | ||
| J3_3PIO_009 | No text annotation | ||
| J4_3PIO_002 | No text annotation | ||
| J4_3PIO_003 | No text annotation | ||
| J4_3PIO_005 | No text annotation | ||
| J5_3PIO_001 | No text annotation | ||
| J5_3PIO_005 | No text annotation | ||
| J5_3PIO_006 | No text annotation | ||
| J6_3PIO_001 | No text annotation | ||
| J9_3PIO_001 | No text annotation |
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