HL_3PIO_012

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

3PIO|1|X|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.222

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3PIO|1|X|G|423
3PIO|1|X|G|424
3PIO|1|X|A|425
3PIO|1|X|C|426
3PIO|1|X|C|427
3PIO|1|X|A|428
3PIO|1|X|C|429
3PIO|1|X|C|430

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains