HL_3PIO_019

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

3PIO|1|X|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_019 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.382

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81314.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3PIO|1|X|C|651
3PIO|1|X|C|652
3PIO|1|X|G|653
3PIO|1|X|A|654
3PIO|1|X|A|655
3PIO|1|X|U|656
3PIO|1|X|A|657
3PIO|1|X|G|658

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35