HL_3PIO_035

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AAGCUAUGGCUAUGCU

Length

16 nucleotides

Bulged bases

3PIO|1|X|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|A|1463
3PIO|1|X|A|1464
3PIO|1|X|G|1465
3PIO|1|X|C|1466
3PIO|1|X|U|1467
3PIO|1|X|A|1468
3PIO|1|X|U|1469
3PIO|1|X|G|1470
3PIO|1|X|G|1471
3PIO|1|X|C|1472
3PIO|1|X|U|1473
3PIO|1|X|A|1474
3PIO|1|X|U|1475
3PIO|1|X|G|1476
3PIO|1|X|C|1477
3PIO|1|X|U|1478

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S ribosomal protein L17