HL_3PIO_039

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

3PIO|1|X|A|1630, 3PIO|1|X|A|1632, 3PIO|1|X|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_039 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.2344

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

3PIO|1|X|C|1628
3PIO|1|X|G|1629
3PIO|1|X|A|1630
3PIO|1|X|C|1631
3PIO|1|X|A|1632
3PIO|1|X|C|1633
3PIO|1|X|A|1634
3PIO|1|X|G|1635

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain P

50S ribosomal protein L22