HL_3PIO_066

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

3PIO|1|X|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_066 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0967

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3PIO|1|X|G|2794
3PIO|1|X|A|2795
3PIO|1|X|A|2796
3PIO|1|X|G|2797
3PIO|1|X|A|2798
3PIO|1|X|C|2799
3PIO|1|X|C|2800
3PIO|1|X|A|2801
3PIO|1|X|C|2802

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19