Loop HL_3PIO

3D structure

PDB id: 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å

Loop

Sequence: CAGGAGGUUGGCUUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCACUG
Length: 54 nucleotides
Bulged bases: 3PIO|1|X|U|1072, 3PIO|1|X|A|1081, 3PIO|1|X|A|1095
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3PIO|1|X|C|1064
3PIO|1|X|A|1065
3PIO|1|X|G|1066
3PIO|1|X|G|1067
3PIO|1|X|A|1068
3PIO|1|X|G|1069
3PIO|1|X|G|1070
3PIO|1|X|U|1071
3PIO|1|X|U|1072
3PIO|1|X|G|1073
3PIO|1|X|G|1074
3PIO|1|X|C|1075
3PIO|1|X|U|1076
3PIO|1|X|U|1077
3PIO|1|X|A|1078
3PIO|1|X|G|1079
3PIO|1|X|A|1080
3PIO|1|X|A|1081
3PIO|1|X|G|1082
3PIO|1|X|C|1083
3PIO|1|X|A|1084
3PIO|1|X|G|1085
3PIO|1|X|C|1086
3PIO|1|X|C|1087
3PIO|1|X|A|1088
3PIO|1|X|C|1089
3PIO|1|X|C|1090
3PIO|1|X|C|1091
3PIO|1|X|U|1092
3PIO|1|X|U|1093
3PIO|1|X|C|1094
3PIO|1|X|A|1095
3PIO|1|X|A|1096
3PIO|1|X|A|1097
3PIO|1|X|G|1098
3PIO|1|X|A|1099
3PIO|1|X|G|1100
3PIO|1|X|U|1101
3PIO|1|X|G|1102
3PIO|1|X|C|1103
3PIO|1|X|G|1104
3PIO|1|X|U|1105
3PIO|1|X|A|1106
3PIO|1|X|A|1107
3PIO|1|X|U|1108
3PIO|1|X|A|1109
3PIO|1|X|G|1110
3PIO|1|X|C|1111
3PIO|1|X|U|1112
3PIO|1|X|C|1113
3PIO|1|X|A|1114
3PIO|1|X|C|1115
3PIO|1|X|U|1116
3PIO|1|X|G|1117

Current chains

Chain X: RIBOSOMAL 23S RNA

Nearby chains

Chain 4: 50S ribosomal protein L36
Chain E: 50S ribosomal protein L6
Chain F: 50S ribosomal protein L11
Chain J: 50S ribosomal protein L16
Chain S: 50S ribosomal protein L25

HL_3PIO_071