HL_3PIO_073

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAAAAAUCACUUUCG

Length

16 nucleotides

Bulged bases

3PIO|1|X|A|2190, 3PIO|1|X|A|2191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|U|2185
3PIO|1|X|G|2186
3PIO|1|X|A|2187
3PIO|1|X|A|2188
3PIO|1|X|A|2189
3PIO|1|X|A|2190
3PIO|1|X|A|2191
3PIO|1|X|U|2192
3PIO|1|X|C|2193
3PIO|1|X|A|2194
3PIO|1|X|C|2195
3PIO|1|X|U|2196
3PIO|1|X|U|2197
3PIO|1|X|U|2198
3PIO|1|X|C|2199
3PIO|1|X|G|2200

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28