HL_3PIO_074

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGCUGAAAGCAUCUAAGCG

Length

19 nucleotides

Bulged bases

3PIO|1|X|G|2731, 3PIO|1|X|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|C|2723
3PIO|1|X|G|2724
3PIO|1|X|C|2725
3PIO|1|X|U|2726
3PIO|1|X|G|2727
3PIO|1|X|A|2728
3PIO|1|X|A|2729
3PIO|1|X|A|2730
3PIO|1|X|G|2731
3PIO|1|X|C|2732
3PIO|1|X|A|2733
3PIO|1|X|U|2734
3PIO|1|X|C|2735
3PIO|1|X|U|2736
3PIO|1|X|A|2737
3PIO|1|X|A|2738
3PIO|1|X|G|2739
3PIO|1|X|C|2740
3PIO|1|X|G|2741

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13