HL_3PIO_076

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

3PIO|1|X|U|1409, 3PIO|1|X|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIO_076 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.2055

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3PIO|1|X|G|1402
3PIO|1|X|U|1403
3PIO|1|X|C|1404
3PIO|1|X|A|1405
3PIO|1|X|A|1406
3PIO|1|X|G|1407
3PIO|1|X|A|1408
3PIO|1|X|U|1409
3PIO|1|X|U|1410
3PIO|1|X|C|1411

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23