HL_3PIP_023

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGCUAAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_023 not in the Motif Atlas

Geometric match to HL_1GAX_004

Geometric discrepancy: 0.3533

The information below is about HL_1GAX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_07951.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

3PIP|1|X|G|887
3PIP|1|X|G|888
3PIP|1|X|C|889
3PIP|1|X|U|890
3PIP|1|X|A|911
3PIP|1|X|A|912
3PIP|1|X|A|913
3PIP|1|X|C|914
3PIP|1|X|C|915

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25