HL_3PIP_039

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

3PIP|1|X|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_039 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.2535

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

3PIP|1|X|U|1647
3PIP|1|X|C|1648
3PIP|1|X|A|1649
3PIP|1|X|A|1650
3PIP|1|X|U|1651
3PIP|1|X|G|1652

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains