HL_3PIP_051

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

3PIP|1|X|A|2247, 3PIP|1|X|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_051 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1584

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3PIP|1|X|C|2243
3PIP|1|X|C|2244
3PIP|1|X|A|2245
3PIP|1|X|A|2246
3PIP|1|X|A|2247
3PIP|1|X|A|2248
3PIP|1|X|U|2249
3PIP|1|X|G|2250
3PIP|1|X|U|2251
3PIP|1|X|A|2252
3PIP|1|X|A|2253
3PIP|1|X|C|2254
3PIP|1|X|G|2255

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA