HL_3PIP_063

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3PIP|1|X|G|2731, 3PIP|1|X|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_063 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1851

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|C|2725
3PIP|1|X|U|2726
3PIP|1|X|G|2727
3PIP|1|X|A|2728
3PIP|1|X|A|2729
3PIP|1|X|A|2730
3PIP|1|X|G|2731
3PIP|1|X|C|2732
3PIP|1|X|A|2733
3PIP|1|X|U|2734
3PIP|1|X|C|2735
3PIP|1|X|U|2736
3PIP|1|X|A|2737
3PIP|1|X|A|2738
3PIP|1|X|G|2739

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6