HL_3PIP_071

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUGAGAGUCC

Length

11 nucleotides

Bulged bases

3PIP|1|X|G|340, 3PIP|1|X|A|341, 3PIP|1|X|G|342, 3PIP|1|X|A|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_071 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.178

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

3PIP|1|X|G|337
3PIP|1|X|G|338
3PIP|1|X|U|339
3PIP|1|X|G|340
3PIP|1|X|A|341
3PIP|1|X|G|342
3PIP|1|X|A|343
3PIP|1|X|G|344
3PIP|1|X|U|345
3PIP|1|X|C|346
3PIP|1|X|C|347

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24