HL_3PIP_073

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

3PIP|1|X|A|794, 3PIP|1|X|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_073 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2741

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

3PIP|1|X|G|791
3PIP|1|X|U|792
3PIP|1|X|G|793
3PIP|1|X|A|794
3PIP|1|X|A|795
3PIP|1|X|A|796
3PIP|1|X|A|797
3PIP|1|X|G|798
3PIP|1|X|C|799

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2