HL_3PIP_079

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

ACUGACACGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3PIP_079 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.2463

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|A|2333
3PIP|1|X|C|2334
3PIP|1|X|U|2335
3PIP|1|X|G|2336
3PIP|1|X|A|2337
3PIP|1|X|C|2338
3PIP|1|X|A|2339
3PIP|1|X|C|2340
3PIP|1|X|G|2341
3PIP|1|X|U|2342

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27