HL_3R1L_011

3D structure

PDB id

3R1L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

(GTP)GAACACUAUAC

Length

12 nucleotides

Bulged bases

3R1L|1|C|A|3, 3R1L|1|C|A|4

QA status

Modified nucleotides: GTP

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3R1L_011 not in the Motif Atlas

Geometric match to HL_3HHN_006

Geometric discrepancy: 0.1068

The information below is about HL_3HHN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32279.1

Basepair signature

cWW-tSH-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3R1L|1|C|GTP|1
3R1L|1|C|G|2
3R1L|1|C|A|3
3R1L|1|C|A|4
3R1L|1|C|C|5
3R1L|1|C|A|6
3R1L|1|C|C|7
3R1L|1|C|U|8
3R1L|1|C|A|9
3R1L|1|C|U|10
3R1L|1|C|A|11
3R1L|1|C|C|12

Current chains

Chain C

Class I ligase ribozyme

Nearby chains

Chain B

5'-R(*UP*CP*CP*AP*GP*UP*A)-3'