3R1L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3R1L_011 | 1/C/1:12 | No text annotation | geometric HL_3HHN_006 HL_32279.1 | |
| HL_3R1L_002 | 1/C/40:44 | No text annotation | geometric HL_3IVK_002 HL_80709.5 | |
| HL_3R1L_004 | 1/C/75:82 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.5 | |
| HL_3R1L_005 | 1/C/92:99 | GNRA with tandem sheared | geometric HL_3HHN_010 HL_98423.4 | |
| HL_3R1L_003 | 1/C/1004:1015 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_5DDP_002 HL_36992.2 | |
| HL_3R1L_012 | 1/F/1:12 | No text annotation | geometric HL_3HHN_006 HL_32279.1 | |
| HL_3R1L_007 | 1/F/40:44 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_3R1L_009 | 1/F/75:82 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.5 | |
| HL_3R1L_010 | 1/F/92:99 | GNRA with tandem sheared | geometric HL_3HHN_010 HL_98423.4 | |
| HL_3R1L_008 | 1/F/1004:1015 | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_3HHN_008 HL_36992.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3R1L_001 | 1/C/46:48, 1/C/112:113 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 | |
| IL_3R1L_002 | 1/C/87:89, 1/C/102:104 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.5 | |
| IL_3R1L_003 | 1/F/46:48, 1/F/112:113 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 | |
| IL_3R1L_004 | 1/F/87:89, 1/F/102:104 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3R1L_001 | 1/C/54:55, 1/C/69:72, 1/C/85:86, 1/C/105:106 | No text annotation | ||
| J4_3R1L_002 | 1/F/54:55, 1/F/69:72, 1/F/85:86, 1/F/105:106 | No text annotation |
Problematic loops
No problematic loops
Coloring options: