HL_3R4F_006

3D structure

PDB id

3R4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Prohead RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3R4F_006 not in the Motif Atlas

Geometric match to HL_3R4F_005

Geometric discrepancy: 0.0004

The information below is about HL_3R4F_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

3R4F|1|A|U|52||||15_545
3R4F|1|A|G|53||||15_545
3R4F|1|A|G|54||||15_545
3R4F|1|A|U|55||||15_545
3R4F|1|A|U|56||||15_545
3R4F|1|A|G|57||||15_545

Current chains

Chain A

pRNA

Nearby chains