HL_3R8N_043

3D structure

PDB id

3R8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3R8N|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3R8N_043 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.1063

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3R8N|1|A|G|259
3R8N|1|A|G|260
3R8N|1|A|U|261
3R8N|1|A|A|262
3R8N|1|A|A|263
3R8N|1|A|C|264
3R8N|1|A|G|265
3R8N|1|A|G|266
3R8N|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20