HL_3R8O_043

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

3R8O|1|A|C|330, 3R8O|1|A|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3R8O_043 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.1021

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3R8O|1|A|A|320
3R8O|1|A|A|321
3R8O|1|A|C|322
3R8O|1|A|U|323
3R8O|1|A|G|324
3R8O|1|A|A|325
3R8O|1|A|G|326
3R8O|1|A|A|327
3R8O|1|A|C|328
3R8O|1|A|A|329
3R8O|1|A|C|330
3R8O|1|A|G|331
3R8O|1|A|G|332
3R8O|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20