HL_3R8O_065

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

3R8O|1|A|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3R8O_065 not in the Motif Atlas

Geometric match to HL_4LFB_030

Geometric discrepancy: 0.2674

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

3R8O|1|A|G|1356
3R8O|1|A|A|1357
3R8O|1|A|U|1358
3R8O|1|A|C|1359
3R8O|1|A|A|1360
3R8O|1|A|G|1361
3R8O|1|A|A|1362
3R8O|1|A|A|1363
3R8O|1|A|U|1364
3R8O|1|A|G|1365
3R8O|1|A|C|1366

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14