HL_3R9X_001

3D structure

PDB id

3R9X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Era in complex with MgGDPNP, nucleotides 1506-1542 of 16S ribosomal RNA, and KsgA

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AGGGGAACCU

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82231.1

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3R9X|1|C|A|1513
3R9X|1|C|G|1514
3R9X|1|C|G|1515
3R9X|1|C|G|1516
3R9X|1|C|G|1517
3R9X|1|C|A|1518
3R9X|1|C|A|1519
3R9X|1|C|C|1520
3R9X|1|C|C|1521
3R9X|1|C|U|1522

Current chains

Chain C

RNA301

Nearby chains

Chain A

GTPase Era

Chain B

Ribosomal RNA small subunit methyltransferase A