Motif HL_82231.1 Version HL_82231.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R9X_001 | 3R9X | 0.7027 | 2 | C | RNA301 | A | 1513 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | C | 1520 | C | 1521 | U | 1522 | cWW | ncWW | ncWW | |
| 2 | HL_8HNT_001 | 8HNT | 0.5762 | 0 | B | sgRNA | C | 35 | C | 36 | U | 37 | U | 38 | U | 39 | A | 52 | C | 53 | G | 54 | cWW | cHW | ||
| 3 | HL_5E6M_001 | 5E6M | 0.0000 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | |
| 4 | HL_4QEI_001 | 4QEI | 0.1172 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | |
| 5 | HL_2D6F_004 | 2D6F | 0.2338 | 4 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | U | 916 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGUGGUAUC | 2 |
| AGGGGAACCU | 1 |
| CCUUUACG | 1 |
| GUAGUGGUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUGGUAU | 2 |
| GGGGAACC | 1 |
| CUUUAC | 1 |
| UAGUGGUAAU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.40 | Max 0.75
Coloring options: