HL_3T1H_018

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

3T1H|1|A|U|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3T1H_018 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.333

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

3T1H|1|A|G|820
3T1H|1|A|G|821
3T1H|1|A|U|822
3T1H|1|A|C|823
3T1H|1|A|U|824
3T1H|1|A|C|825
3T1H|1|A|C|826

Current chains

Chain A

16s rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain R

30S ribosomal protein S18