HL_3T1Y_036
3D structure
- PDB id
- 3T1Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GACU(70U)UU(12A)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 70U, 12A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3T1Y_036 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2492
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3T1Y|1|X|G|30
3T1Y|1|X|A|31
3T1Y|1|X|C|32
3T1Y|1|X|U|33
3T1Y|1|X|70U|34
3T1Y|1|X|U|35
3T1Y|1|X|U|36
3T1Y|1|X|12A|37
3T1Y|1|X|A|38
3T1Y|1|X|PSU|39
3T1Y|1|X|C|40
Current chains
- Chain X
- tRNA ASL human Lys3
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain M
- 30S ribosomal protein S13
- Chain W
- mRNA A-site fragment
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