HL_3T4B_003

3D structure

PDB id

3T4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the HCV IRES pseudoknot domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUUGCGAGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31286.1

Basepair signature

cWW-tWH-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

3T4B|1|A|C|304
3T4B|1|A|U|305
3T4B|1|A|U|306
3T4B|1|A|G|307
3T4B|1|A|C|308
3T4B|1|A|G|309
3T4B|1|A|A|310
3T4B|1|A|G|311
3T4B|1|A|U|312
3T4B|1|A|G|313

Current chains

Chain A

HCV IRES pseudoknot domain plus crystallization module

Nearby chains