Motif HL_31286.1 Version HL_31286.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3MJA_001 | 3MJA | 0.7120 | 1 | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 2 | HL_4V83_139 | 4V83 | 0.7019 | 1 | CV | domain 3 of PSIC IGR IRES RNA | A | 6160 | U | 6161 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | U | 6169 | cWW | ncWW | |
| 3 | HL_3T4B_003 | 3T4B | 0.5994 | 1 | A | HCV IRES pseudoknot domain plus crystallization module | C | 304 | U | 305 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | ncWw | |
| 4 | HL_5TPY_005 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28 | U | 29 | G | 31 | G | 32 | G | 33 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH | |
| 5 | HL_5TPY_008 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||4_655 | U | 29||||4_655 | G | 31||||4_655 | G | 32||||4_655 | G | 33||||4_655 | G | 34||||4_655 | A | 35||||4_655 | A | 36||||4_655 | G | 38||||4_655 | cWW | tWH | |
| 6 | HL_5TPY_011 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||8_555 | U | 29||||8_555 | G | 31||||8_555 | G | 32||||8_555 | G | 33||||8_555 | G | 34||||8_555 | A | 35||||8_555 | A | 36||||8_555 | G | 38||||8_555 | cWW | tWH | |
| 7 | HL_5TPY_002 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||11_655 | U | 29||||11_655 | G | 31||||11_655 | G | 32||||11_655 | G | 33||||11_655 | G | 34||||11_655 | A | 35||||11_655 | A | 36||||11_655 | G | 38||||11_655 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGGAAAG | 4 |
| AUUAGGUAGU | 1 |
| AUUAAGUGGU | 1 |
| CUUGCGAGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGGAAA | 4 |
| UUAGGUAG | 1 |
| UUAAGUGG | 1 |
| UUGCGAGU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.37 | Max 0.71
Coloring options: