HL_3U5F_014

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57225.1

Basepair signature

cWW-R-R-R-R-tSH-R-R-R-R

Number of instances in this motif group

3

Unit IDs

3U5F|1|6|A|520
3U5F|1|6|A|521
3U5F|1|6|U|522
3U5F|1|6|G|523
3U5F|1|6|U|524
3U5F|1|6|A|525
3U5F|1|6|A|526
3U5F|1|6|A|527
3U5F|1|6|U|528
3U5F|1|6|A|529
3U5F|1|6|C|530
3U5F|1|6|C|531
3U5F|1|6|U|532

Current chains

Chain 6

18S rRNA

Nearby chains