#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 7 8 9 10 11 12 131-132-123-113-124-74-10
1 HL_4R0D_0064R0D0.94340AGroup II catalytic intronU217U218C219G220A221C222A223U224A225A226G227G228G229ncWWcSWntSH
2 HL_3U5F_0143U5F0.00000618S rRNAA520A521U522G523U524A525A526A527U528A529C530C531U532cWWncWWatSH
3 HL_4CUX_0144CUX0.16180218S RRNAA520A521U522G523U524A525A526A527U528A529C530C531U532cWWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
AAUGUAAAUACCU2
UUCGACAUAAGGG1
Non-Watson-Crick part of the motif
SequenceCounts
AUGUAAAUACC2
UCGACAUAAGG1

Release history

Release1.18
Date2014-10-09
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_57225.1Only in the parent motif
HL_34954.1
Compare
HL_4CUX_014, HL_3U5F_014HL_4R0D_006HL_1VX2_007, HL_1VX2_013

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-R-R-R-R-tSH-R-R-R-R
    Heat map statistics
    Min 0.16 | Avg 0.46 | Max 0.96
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3289 s