Motif HL_57225.1 Version HL_57225.1 of this group appears in releases 1.18 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 3-12 | 4-7 | 4-10 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4R0D_006 | 4R0D | 0.9434 | 0 | A | Group II catalytic intron | U | 217 | U | 218 | C | 219 | G | 220 | A | 221 | C | 222 | A | 223 | U | 224 | A | 225 | A | 226 | G | 227 | G | 228 | G | 229 | ncWW | cSW | ntSH | |||
2 | HL_3U5F_014 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH | |||
3 | HL_4CUX_014 | 4CUX | 0.1618 | 0 | 2 | 18S RRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AAUGUAAAUACCU | 2 |
UUCGACAUAAGGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUGUAAAUACC | 2 |
UCGACAUAAGG | 1 |
Release history
Release | 1.18 |
---|---|
Date | 2014-10-09 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in HL_57225.1 | Only in the parent motif |
---|---|---|---|
HL_34954.1 Compare | HL_4CUX_014, HL_3U5F_014 | HL_4R0D_006 | HL_1VX2_007, HL_1VX2_013 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-tSH-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.46 | Max 0.96
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