HL_3U5F_020

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84911.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

3

Unit IDs

3U5F|1|6|A|829
3U5F|1|6|U|830
3U5F|1|6|U|831
3U5F|1|6|U|832
3U5F|1|6|U|833
3U5F|1|6|G|834
3U5F|1|6|U|835
3U5F|1|6|U|836
3U5F|1|6|G|837
3U5F|1|6|G|838
3U5F|1|6|U|839
3U5F|1|6|U|840
3U5F|1|6|U|841
3U5F|1|6|C|842
3U5F|1|6|U|843

Current chains

Chain 6

18S rRNA

Nearby chains