Motif HL_84911.1 Version HL_84911.1 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-15 | 3-13 | 4-12 | 6-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUV_034 | 4CUV | 0.9783 | 1 | 1 | 25S RRNA | C | 1562 | C | 1563 | U | 1564 | G | 1565 | A | 1566 | U | 1567 | U | 1568 | U | 1570 | A | 1571 | U | 1572 | G | 1573 | C | 1574 | A | 1575 | G | 1576 | G | 1577 | ncWW | cWW | ncSW | ||
| 2 | HL_4CUX_020 | 4CUX | 0.0000 | 0 | 2 | 18S RRNA | A | 829 | U | 830 | U | 831 | U | 832 | U | 833 | G | 834 | U | 835 | U | 836 | G | 837 | G | 838 | U | 839 | U | 840 | U | 841 | C | 842 | U | 843 | cWW | ncHW | |||
| 3 | HL_3U5F_020 | 3U5F | 0.4295 | 0 | 6 | 18S rRNA | A | 829 | U | 830 | U | 831 | U | 832 | U | 833 | G | 834 | U | 835 | U | 836 | G | 837 | G | 838 | U | 839 | U | 840 | U | 841 | C | 842 | U | 843 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUUUGUUGGUUUCU | 2 |
| CCUGAUUUUAUGCAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUGUUGGUUUC | 2 |
| CUGAUUUUAUGCAG | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_84911.1 | Only in the parent motif |
|---|---|---|---|
| HL_63304.1 Compare | HL_3U5F_020 | HL_4CUV_034, HL_4CUX_020 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.43 | Avg 0.53 | Max 0.99
Coloring options: