3D structure

PDB id
3U5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
3U5H|1|5|A|1245
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_72543.3
Basepair signature
cWW-tSH-R-R-R-R-R-R
Number of instances in this motif group
6

Unit IDs

3U5H|1|5|C|1239
3U5H|1|5|A|1240
3U5H|1|5|U|1241
3U5H|1|5|G|1242
3U5H|1|5|G|1243
3U5H|1|5|A|1244
3U5H|1|5|A|1245
3U5H|1|5|G|1246
3U5H|1|5|U|1247
3U5H|1|5|C|1248
3U5H|1|5|G|1249

Current chains

Chain 5
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2518 s
Application loaded.